TOPIC
Open Source
8 entries across the knowledge base
Synthea (Synthetic Patient Generator)Open-source software that generates realistic but entirely fake patient records — FHIR, C-CDA, CSV — so you can build and test health systems without touching real PHI.concept · 6 min · foundationMedplumAn open-source, FHIR-native developer platform — a headless backend with a FHIR datastore, auth, subscriptions and automation — for building healthcare apps fast.concept · 6 min · foundationHAPI FHIRThe de-facto open-source FHIR implementation for Java: parsers, a client, and a full server that many health systems and vendors build on.concept · 6 min · foundation
WhiteRabbit & Rabbit-in-a-Hat (OMOP ETL design)OHDSI tools that profile your source database and help you design the ETL that maps it to the OMOP Common Data Model — the planning stage of data harmonization.concept · 6 min · foundationOHDSI ATLASAn open-source web app for designing and running observational studies on OMOP data — cohorts, characterization, incidence and prediction — without writing SQL by hand.concept · 6 min · foundation
scispaCy (Biomedical NLP)A lightweight, Python-native library for biomedical and clinical text: fast NER, abbreviation detection and UMLS entity linking, built on spaCy.concept · 6 min · foundationApache cTAKES (Clinical NLP)An open-source engine that reads clinical free text and extracts coded concepts — symptoms, diagnoses, medications, procedures — mapped to UMLS, SNOMED CT and RxNorm.concept · 7 min · foundation